Publications - Équipe 6
2024
Leiba J, Sipka T, Begon-Pescia C, Bernardello M, Tairi S, Bossi L, Gonzalez AA, Mialhe X, Gualda E, Loza-Alvarez P, Blanc-Potard A, Lutfalla G, Nguyen-Chi M (2024) Dynamics of macrophage polarization support Salmonella persistence in a whole living organism. Elife 13:e89828. doi:10.7554/eLife.89828
2023
Resseguier J, Nguyen-Chi M, Wohlmann J, Rigaudeau D, Salinas I, Oehlers SH, Wiegertjes GF, Johansen FE, Qiao SW, Koppang EO, Verrier B, Boudinot P, Griffiths G (2023) Identification of a pharyngeal mucosal lymphoid organ in zebrafish and other teleosts : Tonsils in fish ? Sci Adv 9:eadj0101. doi:10.1126/sciadv.adj0101
Paris T, Kiss A, Signor L, Lutfalla G, Blaise M, Boeri-Erba E, Chaloin L, Yatime L (2023) The IbeA protein from Adherent-Invasive Escherichia coli is a flavoprotein showing structural homology with FAD-dependent oxidoreductases. FEBS J. Online ahead of print. doi:10.1111/febs.16969
Park SA, Sipka T, Kriva Z, Lutfalla G, Nguyen-Chi M, Mikula K (2023) Segmentation-based tracking of macrophages in 2D+time microscopy movies inside a living animal. Comput Biol Med 153, 106499. doi:10.1016/j.compbiomed.2022.106499
Lelièvre E, Bureau C, Bordat Y, Frétaud M, Langevin C, Jopling C, Kissa K (2023) Deficiency in hereditary hemorrhagic telangiectasia-associated Endoglin elicits hypoxia-driven heart failure in zebrafish. Dis Model Mech 16:dmm049488. doi:10.1242/dmm.049488
Rahimova R, Nogaret P, Huteau V, Gelin M, Clément DA, Labesse G, Pochet S, Blanc-Potard AB, Lionne C (2023) Structure-based design, synthesis and biological evaluation of a NAD+ analogue targeting Pseudomonas aeruginosa NAD kinase. FEBS J 290:482-501. doi:10.1111/febs.16604
Leiba J, Ozbilgic R, Hernandez L, Demou M, Lutfalla G, Yatime L, Nguyen Chi M (2023) Molecular actors of inflammation and their signaling pathways : mechanistic insights from zebrafish. Biology 12, 153. doi : 10.3390/biology12020153
2022
Sipka T, Park SA, Ozbilgic R, Balas L, Durand T, Mikula K, Lutfalla G, Nguyen-Chi M (2022) Macrophages undergo a behavioural switch during wound healing in zebrafish. Free Rad Biol Med 192:200-212. doi:10.1016/j.freeradbiomed.2022.09.021
Le Moigne V, Rodriguez Rincon D, Glatigny S, Dupont CM, Langevin C, Ait Ali Said A, Renshaw SA, Floto RA, Herrmann JL, Bernut A (2022) Roscovitine worsens Mycobacterium abscessus infection by reducing DUOX2-mediated neutrophil response. Am J Respir Cell Mol Biol 66:439-451. doi:10.1165/rcmb.2021-0406OC
Begon-Pescia C, Boireau S, Boyer-Clavel M, Lutfalla G, Nguyen-Chi M (2022) Preparing sequencing grade RNAs from a small number of FACS-sorted larvae macrophages isolated from enzyme free dissociated zebrafish larvae. MethodsX 9, 101651. doi:10.1016/j.mex.2022.101651
Charmantier G, Nguyen-Chi M, Lutfalla G (2022) Ontogenetic Changes in Blood Osmolality During the Postembryonic Development of Zebrafish(Danio rerio). Zebrafish 19:1-6. doi:10.1089/zeb.2021.0075
Paris T, Yatime L (2022) Les CEACAM épithéliales, plateformes d'ancrage des microorganismes pathogènes dans les muqueuses. Med Sci 38, 650-653. doi : 10.1051/medsci/2022097
2021
Sipka T, Peroceschi R, Hassan-Abdi R, Groß M, Ellett F, Begon-Pescia C, Gonzalez C, Lutfalla G, Nguyen-Chi M (2021) Damage-Induced Calcium Signaling and Reactive Oxygen Species Mediate Macrophage Activation in Zebrafish. Front Immunol 12:636585. doi:10.3389/fimmu.2021.636585
Sacher-Pirklbauer A, Klein-Jöbstl D, Sofka D, Blanc-Potard AB, Hilbert F (2021) Phylogenetic Groups and Antimicrobial Resistance Genes in Escherichia coli from Different Meat Species. Antibiotics 10:1543. doi:10.3390/antibiotics10121543
Pont S, Blanc-Potard AB (2021) Zebrafish Embryo Infection Model to Investigate Pseudomonas aeruginosa Interaction With Innate Immunity and Validate New Therapeutics. Front Cell Infect Microbiol 11:745851. doi:10.3389/fcimb.2021.745851
Laplace-Builhé B, Barthelaix A, Assou S, Bohaud C, Pratlong M, Severac D, Tejedor G, Luz-Crawford P, Nguyen-Chi M, Mathieu M, Jorgensen C, Djouad F (2021) NRG1/ErbB signalling controls the dialogue between macrophages and neural crest-derived cells during zebrafish fin regeneration. Nat Commun 12:6336. doi:10.1038/s41467-021-26422-5
Jacobs S, Dóró E, Hammond FR, Scheer M, Nguyen-Chi M, Lutfalla L, Wiegertjes G, Forlenza M (2021) Occurrence of foamy macrophages during the innate response of zebrafish to trypanosome infections. eLife 10:e64520. doi:10.7554/eLife.64520
Kowalewski J, Paris T, Gonzalez C, Lelièvre L, Castaño Valencia L, Boutrois M, Augier C, Lutfalla G, Yatime L (2021) Characterization of a member of the CEACAM protein family as a novel marker of proton pump-rich ionocytes on the zebrafish epidermis. PLoS ONE 16, e0254533. doi:10.1371/journal.pone.0254533
Nogaret P, El Garah F, Blanc-Potard AB (2021) Un nouveau protocole d'infection dans l'embryon de poisson zèbre pour évaluer la virulence de Pseudomonas aeruginosa et valider l'efficacité d'un inhibiteur du quorum sensing in vivo. Pathogènes 10:401. doi:10.3390/pathogens10040401
Travnickova J, Nhim S, Abdellaoui N, Djouad F, Nguyen-Chi M, Parmeggiani A, Kissa K (2021) Macrophage morphological plasticity and migration is Rac signalling and MMP9 dependant. Sci Rep 11, 10123. doi:10.1038/s41598-021-88961-7
Moussouni M, Berry L, Sipka T, Nguyen-Chi M, Blanc-Potard AB (2021) Pseudomonas aeruginosa OprF joue un rôle dans la résistance à la clairance des macrophages pendant l'infection aiguë. Sci Rep 11, 359. doi : 0.1038/s41598-020-79678-0
Signor L, Paris T, Mas C, Picard A, Lutfalla G, Bori-Erba E, Yatime L (2021) Divalent cations influence the dimerization mode of murine S100A9 protein by modulating its disulfide bond pattern. J Struct Biol 213:107689. doi:10.1016/j.jsb.2020.107689
2020
Bernut A, Loynes CA, R Floto A, Renshaw SA (2020) Deletion of cftr Leads to an Excessive Neutrophilic Response and Defective Tissue Repair in a Zebrafish Model of Sterile Inflammation. Front Immunol 11, 1733. doi:10.3389/fimmu.2020.01733
Nguyen-Chi M, Luz-Crawford P, Balas L, Sipka T, Contreras-López R, Barthelaix A, Lutfalla G, Durand T, Jorgensen C, Djouad F (2020) Pro-resolving mediator protectin D1 promotes epimorphic regeneration by controlling immune cell function in vertebrates. Br J Pharmacol 177, 4055-4073. doi:10.1111/bph.15156
May O, Yatime L, Merle NS, Delguste F, Howsam M, Daugan M, Constant CP, Billamboz M, Ghinet A, Lancel S, Dimitrov JD, Boulanger E, Roumenina LT, Frimat M (2020) The receptor for advanced glycation end products is a sensor for cell-free heme. FEBS J 288, 3448-3464. doi:10.1111/febs.15667
Park SA, Sipka T, Krivá Z, Ambroz M, Kollár M, Kósa B, Nguyen-Chi M, Lutfalla G, Mikula K (2020) Macrophage Image Segmentation by Thresholding and Subjective Surface Method. Tatra Mt Math Publ 75, 103-120. doi:10.2478/tmmp-2020-0007
2019
Maarifi G, Smith N, Maillet S, Moncorgé O, Chamontin C, Edouard J, Sohm F, Blanchet FP, Herbeuval JP, Lutfalla G, Levraud JP, Arhel NJ, Nisole S (2019) TRIM8 est requis pour la réponse IFN induite par le virus dans les cellules dendritiques plasmacytoïdes humaines. Sci Adv 5:eaax3511. doi:10.1126/sciadv.aax3511
Travnickova J, Nhim S, Abdellaoui N, Djouad F, Nguyen-Chi M, Parmeggiani A, Kissa K (2019) Macrophage plasticity is Rac signalling and MMP9 dependant. Preprint BioRxiv. doi:10.1101/614388
Yatime L (2019) Structural analysis of S100A8 complex with zinc and calcium : a general protocol for the study of S100 proteins in the presence of divalent cations by X-ray crystallography. In C. Heizmann (eds.), Calcium-Binding Proteins of the EF-Hand Superfamily (pp. 417-435). Methods in Molecular Biologyvol. 1929, Humana Press, New York, NY. doi:10.1007/978-1-4939-9030-6_26
2018
Phan QT, Sipka T, Gonzalez C, Levraud JP, Lutfalla G, Nguyen-Chi M (2018) Neutrophils use superoxide to control bacterial infection at a distance. Plos Pathog 14:e1007157. doi:10.1371/journal.ppat.1007157
Yatime L, Merle NS, Hansen AG, Friis NA, Østergaard JA, Bjerre M, Roumenina LT, Thiel S, Kristensen P, Andersen GR (2018) Un anticorps à domaine unique ciblant le composant C5 du complément agit comme un inhibiteur sélectif de la voie terminale du système du complément et imite ainsi fonctionnellement le domaine C-terminal de la protéine SSL7 de Staphylococcus aureus. Front Immunol 9:2822. doi:10.3389/fimmu.2018.02822
2017
Morris EA, Bodin S, Delaval B, Comunale F, Georget V, Costa ML, Lutfalla G, Gauthier-Rouvière C (2017) Flotillins control zebrafish epiboly through their role in cadherin-mediated cell-cell adhesion. Biol Cell 109:210-221. doi:10.1111/boc.201700001
Nguyen-Chi M, Laplace-Builhé B, Travnickova J, Luz-Crawford P, Tejedor G, Lutfalla G, Kissa K, Jorgensen C, Djouad F (2017). La signalisation TNF et les macrophages gouvernent la régénération des nageoires chez les larves de poisson zèbre. Cell Death Dis 8:e2979. doi:10.1038/cddis.2017.374
Yatime L (2017) Un mécanisme d'activation dépendant de la cystéine pour les ligands pro-inflammatoires de RAGE ? Med Sci 33, 351-354. doi:10.1051/medsci/20173303026
2016
Bernut A, Nguyen-Chi M, Halloum I, Herrmann JL, Lutfalla G, Kremer L (2016) Mycobacterium abscessus-Induced Granuloma Formation Is Strictly Dependent on TNF Signaling and Neutrophil Trafficking. PLoS Pathog 12 : e1005986. doi:10.1371/journal.ppat.1005986
Faure E, Campana M, Cunderlik R, Drblikova O, Duloquin L, Keller R, Lombardot B, Melani C, Remesikova M, Rizzi B, Savy T, Recher G, Zanella C, Kollar J, Villoutreix P, Delile J, Affaticati P, Maury, B, Colin I, Desnoulez S, Nief JY, Calvat P, Lutfalla G, Suret P, Doursat R, Sarti A, Mikula K, Peyriéras N, Bourgine P (2016) A workflow to process 3D+time images of developing organisms and reconstruct their cell lineage. Nat Commun 7:8674. doi:10.1038/ncomms9674
Halloum I, Carrère-Kremer S, Blaise M, Viljoen A, Bernut A, LeMoigne V, Vilchèze C, Lutfalla G, Herrmann JL, Jacobs WR Jr, Kremer L (2016) Deletion of a new dehydratase obliterates cording and virulence of rough Mycobacterium abscessus. Proc Natl Acad Sci USA 113:E4228-4237. doi:10.1073/pnas.1605477113
Lin H, Andersen GR, Yatime L (2016) Crystal structure of human S100A8 in complex with zinc and calcium. BMC Struct Biol16 :8. doi:10.1186/s12900-016-0058-4
Nguyen-Chi M, Laplace-Builhe B, Jorgensen C, Djouad F (2016) Deciphering the complexity of macrophage biology and function with the zebrafish model. Macrophage 3:e1260. doi:10.14800/Macrophage.1260
Piazzon C, Lutfalla G, Forlenza M (2016) IL10, a tale of an evolutionary conserved cytokine across vertebrates. Crit Rev Immunol 36:99-129. doi:10.1615/CritRevImmunol.2016017480
Yatime L, Betzer C, Jensen RK, Mortensen S, Jensen PH, Andersen GR (2016) La structure du complexe RAGE:S100A6 révèle un nouveau mode d'homodimérisation pour les protéines S100. Structure 24, 2043-2052. doi:10.1016/j.str.2016.09.011
Yatime L, Bajic G, Schatz-Jakobsen JA, Andersen GR (2016) Complement regulators and inhibitors in health and disease : a structural perspective. Dans K.A. Howard, T. Vorup-Jensen et D. Peer (eds.), Nanomedicine (pp. 13-42). CRS Book Series Advances in Delivery Science and Technology, Springer-Verlag New York. doi:10.1007/978-1-4939-3634-2_2